<?xml version="1.0" ?>
<EXPERIMENT_SET>
	<EXPERIMENT center_name="SCILIFELAB" alias="FS42595433_pr_106">
		<TITLE>Alectoris graeca PacBio HiFi WGS data</TITLE>
		<STUDY_REF refname="bAleGra-study-raw-reads"/>
		<DESIGN>
			<DESIGN_DESCRIPTION/>
			<SAMPLE_DESCRIPTOR refname="FS42595433"/>
			<LIBRARY_DESCRIPTOR>
				<LIBRARY_NAME>pr_106 PacBio HiFi WGS</LIBRARY_NAME>
				<LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
				<LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
				<LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
				<LIBRARY_LAYOUT>
					<SINGLE/>
				</LIBRARY_LAYOUT>
				<LIBRARY_CONSTRUCTION_PROTOCOL>Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 3.0</LIBRARY_CONSTRUCTION_PROTOCOL>
			</LIBRARY_DESCRIPTOR>
		</DESIGN>
		<PLATFORM>
			<PACBIO_SMRT>
				<INSTRUMENT_MODEL>Revio</INSTRUMENT_MODEL>
			</PACBIO_SMRT>
		</PLATFORM>
	</EXPERIMENT>
	<EXPERIMENT center_name="SCILIFELAB" alias="FS42594031_HC010-2A1A-kidney">
		<TITLE>Alectoris graeca Hi-C data, tissue</TITLE>
		<STUDY_REF refname="bAleGra-study-raw-reads"/>
		<DESIGN>
			<DESIGN_DESCRIPTION/>
			<SAMPLE_DESCRIPTOR refname="FS42594031"/>
			<LIBRARY_DESCRIPTOR>
				<LIBRARY_NAME>HC010-2A1A-kidney Illumina Hi-C</LIBRARY_NAME>
				<LIBRARY_STRATEGY>Hi-C</LIBRARY_STRATEGY>
				<LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
				<LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
				<LIBRARY_LAYOUT>
					<PAIRED NOMINAL_LENGTH="558"/>
				</LIBRARY_LAYOUT>
				<LIBRARY_CONSTRUCTION_PROTOCOL>Hi-C library was created as described in the Dovetail Omni-C Kit USER GUIDE v2.0 and library QC was performed using the Qubit dsDNA HS Assay kit and the Agilent High Sensitivity/DNA 12000 DNA Kit.</LIBRARY_CONSTRUCTION_PROTOCOL>
			</LIBRARY_DESCRIPTOR>
		</DESIGN>
		<PLATFORM>
			<ILLUMINA>
				<INSTRUMENT_MODEL>Illumina NovaSeq X</INSTRUMENT_MODEL>
			</ILLUMINA>
		</PLATFORM>
	</EXPERIMENT>
	<EXPERIMENT center_name="SCILIFELAB" alias="FS42595444_HC010-1B1A-blood">
		<TITLE>Alectoris graeca Hi-C data, blood</TITLE>
		<STUDY_REF refname="bAleGra-study-raw-reads"/>
		<DESIGN>
			<DESIGN_DESCRIPTION/>
			<SAMPLE_DESCRIPTOR refname="FS42595444"/>
			<LIBRARY_DESCRIPTOR>
				<LIBRARY_NAME>HC010-1B1A-blood Illumina Hi-C</LIBRARY_NAME>
				<LIBRARY_STRATEGY>Hi-C</LIBRARY_STRATEGY>
				<LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
				<LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
				<LIBRARY_LAYOUT>
					<PAIRED NOMINAL_LENGTH="547"/>
				</LIBRARY_LAYOUT>
				<LIBRARY_CONSTRUCTION_PROTOCOL>Hi-C library was created as described in the Dovetail Omni-C Kit USER GUIDE v2.0 and library QC was performed using the Qubit dsDNA HS Assay kit and the Agilent High Sensitivity/DNA 12000 DNA Kit.</LIBRARY_CONSTRUCTION_PROTOCOL>
			</LIBRARY_DESCRIPTOR>
		</DESIGN>
		<PLATFORM>
			<ILLUMINA>
				<INSTRUMENT_MODEL>Illumina NovaSeq X</INSTRUMENT_MODEL>
			</ILLUMINA>
		</PLATFORM>
	</EXPERIMENT>
	<EXPERIMENT center_name="SCILIFELAB" alias="ERGA_BP_5516_03_RE022-1-4-pool">
		<TITLE>Alectoris graeca Illumina RNA-Seq data</TITLE>
		<STUDY_REF refname="bAleGra-study-raw-reads"/>
		<DESIGN>
			<DESIGN_DESCRIPTION/>
			<SAMPLE_DESCRIPTOR refname="ERGA_BP_5516_03"/>
			<LIBRARY_DESCRIPTOR>
				<LIBRARY_NAME>RE022-1-4-pool Illumina RNA-Seq</LIBRARY_NAME>
				<LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
				<LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
				<LIBRARY_SELECTION>Oligo-dT</LIBRARY_SELECTION>
				<LIBRARY_LAYOUT>
					<PAIRED NOMINAL_LENGTH="150"/>
				</LIBRARY_LAYOUT>
				<LIBRARY_CONSTRUCTION_PROTOCOL>The RNA sequencing library is prepared using the TruSeq Stranded mRNA Library Preparation Kit with poly-A selection (cat# 20020595, Illumina Inc.). Library preparation is performed according to the manufacturer's protocol (#1000000040498). Before library preparation, the quality and quantity of the samples are evaluated using either the Fragment Analyzer system (DNF-471 kit) or the TapeStation 4200 (RNA ScreenTape), both systems from Agilent Technologies.</LIBRARY_CONSTRUCTION_PROTOCOL>
			</LIBRARY_DESCRIPTOR>
		</DESIGN>
		<PLATFORM>
			<ILLUMINA>
				<INSTRUMENT_MODEL>Illumina NovaSeq X</INSTRUMENT_MODEL>
			</ILLUMINA>
		</PLATFORM>
	</EXPERIMENT>
</EXPERIMENT_SET>